05 — collaborators
Collaborators & organisations
Mentors, co-authors, institutions, departments, labs, and research partners. Shared and interesting papers are linked below each person; co-author names on research also jump here.
// supervisors
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pinned
Holm Uhlig
supervisor · Professor of Paediatric Gastroenterology; Director, Centre for Human Genetics
Oxford · CHG · Uhlig Group · Centre for Human Genetics & Department of Paediatrics, University of Oxford
Genetic and immunological mechanisms of intestinal inflammation, with a focus on paediatric IBD, inborn errors of immunity, and monogenic forms of IBD. Primary supervisor at Oxford.
IBD paediatric gastroenterology IEI genomics
profile ↗ lab → department → institution → CHG profile ↗
// interesting papers
- 2026 · Interleukin-10 Autoantibodies and HLA-DRB1*01:03 in Inflammatory Bowel Disease New England Journal of Medicine
- 2024 · Neutralizing Autoantibodies against Interleukin-10 in Inflammatory Bowel Disease New England Journal of Medicine
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Samuel Huber
supervisor · Professor; Clinic Director, I. Department of Medicine
UKE · University Medical Center Hamburg-Eppendorf (UKE) — I. Medical Clinic
Intestinal immune regulation, mucosal immunology, and IBD. Advisor at UKE on knowledge-graph and ML approaches to immune disease classification.
IBD mucosal immunology gastroenterology
profile ↗ institution → UKE profile ↗ Google Scholar ↗ ORCID ↗
// shared papers
- 2024 · Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease npj Systems Biology and Applications
// co-supervisors
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Calliope Dendrou
co-supervisor · Associate Professor in Clinical Pathology and Inflammation
Oxford · Kennedy Institute of Rheumatology, University of Oxford
Immune disease multiomics — shared molecular circuits and cellular mechanisms across immune-mediated diseases. Co-supervisor on knowledge-graph and ML approaches to immune disease classification.
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Dan Woodcock
co-supervisor · Associate Professor of Translational Data Science
Oxford · NDS · Nuffield Department of Surgical Sciences, University of Oxford
Translational data science and machine learning on multi-modal biomedical data. Co-supervisor of the longIBD / master's thesis work at NDS.
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Frank Ückert
co-supervisor · Professor of Medical Informatics; Director, Institute for Applied Medical Informatics
UKE · University Medical Center Hamburg-Eppendorf (UKE) — Applied Medical Informatics
Medical informatics, clinical data platforms, and biomedical AI. Co-supervisor at UKE on knowledge-graph and ML approaches to immune disease classification.
// former supervisors
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pinned
Lorenz Adlung
former supervisor · Independent Junior Group Leader
UKE · HCTI · AdlungLab · University Medical Center Hamburg-Eppendorf (UKE) — AdlungLab
Systems immunology and computational biology of adipose tissue and metabolism. Former supervisor at UKE; ongoing collaboration includes work on longitudinal single-cell data and deterministic modelling of IBD, and earlier research on lipid-associated macrophages.
systems immunology single-cell metabolism IBD
profile ↗ lab → department → institution → UKE profile ↗ Google Scholar ↗ ORCID ↗
// shared papers
- 2024 · Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease npj Systems Biology and Applications
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Christos C. Zouboulis
former supervisor · Professor of Dermatology, Venereology and Allergology
Medizinische Hochschule Brandenburg / Universitätsklinikum Ruppin-Brandenburg
Dermatology, sebaceous gland biology, hidradenitis suppurativa, keloids, and cryosurgery. Former supervisor on HS and keloid / cryosurgery research.
dermatology hidradenitis suppurativa keloids acne cryosurgery
profile ↗ Wikipedia ↗ MHB profile ↗ Google Scholar ↗
// shared papers
- 2026 · Algorithmic optimization of intralesional cryosurgery for keloids: A prospective study Journal of the European Academy of Dermatology and Venereology
- 2024 · Baseline knowledge of dermatology specialists/residents on hidradenitis suppurativa and immediate learning outcome after their participation at an EADV School Journal of the European Academy of Dermatology and Venereology
- 2024 · S2k guideline for the treatment of hidradenitis suppurativa / acne inversa – Short version JDDG: Journal der Deutschen Dermatologischen Gesellschaft
- 2024 · S2k-Leitlinie zur Therapie der Hidradenitis suppurativa/Acne inversa (ICD-10-Code: L73.2) Aktuelle Dermatologie
- 2024 · The inter-rater reliability of IHS4 corroborates its aptitude as primary outcome measurement instrument for large clinical studies in hidradenitis suppurativa Journal of the European Academy of Dermatology and Venereology
- 2021 · Different Types of Auricular Keloids and Treatment by Intralesional Cryosurgery: Best Practice for Obtaining Long-Lasting Clinical Results Dermatology
- 2021 · Hidradenitis Suppurativa and Comorbid Disorder Biomarkers, Druggable Genes, New Drugs and Drug Repurposing — A Molecular Meta-Analysis Pharmaceutics
- 2020 · A novel experimental model for studying efficacy of cryosurgery in keloids Journal of the European Academy of Dermatology and Venereology
- 2020 · Intralesional cryosurgery of keloids: required treatment hold time British Journal of Dermatology
- 2019 · Inter-rater and intrarater agreement and reliability in clinical staging of hidradenitis suppurativa/acne inversa British Journal of Dermatology
- 2017 · Small cryotherapy devices for the treatment of skin warts Journal of Dermatological Treatment
// students
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Simon Tautz
student · Computer science student & entrepreneur
TUM · CHG · Uhlig Group · Technical University of Munich (TUM)
Computer science student at TUM München and entrepreneur. Supervised student on the nanoCITE project (Uhlig Group).
// collaborators
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Christoph Kilian
Clinician scientist
UKE · HCTI · AdlungLab · University Medical Center Hamburg-Eppendorf (UKE) — AdlungLab
Clinician scientist in the Adlung Group. Collaboration includes longitudinal single-cell modelling of IBD and the GCB 2023 poster on adipocyte–LAM ratios.
systems immunology single-cell IBD clinical
profile ↗ lab → department → institution → Google Scholar ↗
// shared papers
- 2024 · Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease npj Systems Biology and Applications
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Alexandra Noble
Postdoctoral scientist
Oxford · CHG · Uhlig Group · Translational Gastroenterology Unit / Centre for Human Genetics, University of Oxford — Uhlig & Satsangi Groups; Green Templeton College
Girdlers’ Health Research Council of New Zealand Fellow. Postdoctoral scientist working on long-read genomic sequencing and DNA methylation biomarkers for IBD, translating assays with Oxford Nanopore sequencing. Collaborator on nanoCITE.
nanopore IBD epigenetics genomics
profile ↗ lab → department → institution → ORCID ↗ Oxford profile ↗
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Pai-Jui Yeh (Charlie)
DPhil student; medical doctor
Oxford · CHG · Uhlig Group · Centre for Human Genetics, University of Oxford — Uhlig Group; St Cross College
Medical doctor from Taiwan and DPhil student in the Uhlig Group (葉栢睿). Collaborator on longIBD and related IL-10 autoantibody work in IBD.
profile ↗ lab → department → institution → CHG profile ↗
// interesting papers
- 2026 · Interleukin-10 Autoantibodies and HLA-DRB1*01:03 in Inflammatory Bowel Disease New England Journal of Medicine
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Fabian Kern
Professor of Machine Learning in Bioinformatics
UHH · ZBH · MLBI — Machine Learning in Bioinformatics · Center for Bioinformatics (ZBH), University of Hamburg — MLBI
Heads the MLBI group at ZBH. Scientific supervision of the Virtual Cell student research group at the University of Hamburg.
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Mikko Kormann
Computing in Science BSc student
UHH · ZBH · MLBI — Machine Learning in Bioinformatics · University of Hamburg — Computing in Science
BSc Computing in Science student at the University of Hamburg. Team member of the Virtual Cell student research group.
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Berenike Rutz
Bioinformatics & Computing in Science student
UHH · ZBH · MLBI — Machine Learning in Bioinformatics · University of Hamburg — Bioinformatics / Computing in Science
Student in Bioinformatics and Computing in Science at the University of Hamburg. Team member of the Virtual Cell student research group; bachelor thesis on single-cell immune signatures in acute stroke.
virtual cell bioinformatics Computing in Science single-cell
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Danisch Khurshid
Medical student
UKE · HCTI · AdlungLab · University Medical Center Hamburg-Eppendorf (UKE) — AdlungLab
Medical student at UKE Hamburg (AdlungLab). Team member of the Virtual Cell student research group.
profile ↗ lab → department → institution → Student research group ↗
// institutions
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University of Oxford
Centre for Human Genetics, Translational Gastroenterology Unit, and related Oxford departments.
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University Medical Center Hamburg-Eppendorf (UKE)
University Medical Center Hamburg-Eppendorf / University of Hamburg.
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University of Hamburg
Universität Hamburg — research university spanning the natural sciences, medicine, and informatics.
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Technical University of Munich
Technical University of Munich.
// departments
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Centre for Human Genetics
Centre for Human Genetics at the University of Oxford — genetics, immunology, and translational research.
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Hamburg Center for Translational Immunology
Hamburg Center for Translational Immunology at UKE — systems immunology and related laboratories.
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Center for Bioinformatics
Zentrum für Bioinformatik at the University of Hamburg — computational biology, cheminformatics, and machine learning in the life sciences.
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Nuffield Department of Surgical Sciences
Academic department of surgery at the University of Oxford — research, clinical innovation, and surgical education.
// labs
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Uhlig Group
Genetic and immunological mechanisms of intestinal inflammation — paediatric IBD, IEI, and monogenic IBD at the Centre for Human Genetics.
4 people → lab -
MLBI — Machine Learning in Bioinformatics
Machine learning and AI methods for biomolecular research — single-cell analysis, knowledge-informed models, and virtual cell approaches at the Center for Bioinformatics.
3 people → lab
// companies
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Johnson & Johnson Experimental Medicine
Johnson & Johnson experimental / innovative medicine programmes — early human pharmacology and translational immunology collaborations.
J&J Experimental Medicine → company -
Oxford Nanopore Technologies
Long-read DNA/RNA sequencing technology — real-time, scalable nanopore platforms spanning portable to high-throughput instruments.
Oxford Nanopore → company